phylosort
Class NewickParser

java.lang.Object
  phylosort.NewickParser

public final class NewickParser
extends java.lang.Object

A parser to Newick (8:45) tree standard format. Currently, it is assumed that no whitespaces are included in the text of the tree.

Version:

$Revision: 1.5 $

Author:

Ahmed Moustafa

Constructor Summary

NewickParser()

Method Summary

static TreeNode	parse(java.lang.String str) Parses a tree string into a TreeNode
static TreeNode	parse(java.lang.String _str, TreeNode parent) Parses a tree string into a TreeNode

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NewickParser

public NewickParser()

Method Detail

parse

public static TreeNode parse(java.lang.String str)

Parses a tree string into a TreeNode

Parameters:

str - The string to parse

Returns:

TreeNode representation of the tree string

parse

public static TreeNode parse(java.lang.String _str,
                             TreeNode parent)

Parses a tree string into a TreeNode

Parameters:

_str - The string to parse

parent - The parent of the tree of the tree to parse

Returns:

TreeNode representation of the tree string