phylosort
Class PhyloCluster

java.lang.Object
  phylosort.PhyloCluster

public class PhyloCluster
extends java.lang.Object

Phylogenetic trees clustering tool

Version:

$Revision: 1.1 $

Author:

Ahmed Moustafa

Constructor Summary

PhyloCluster()

Method Summary

static java.util.List<TreeCluster>	cluster(java.lang.String infolder, java.lang.String outfolder) Clusters trees from an input folder
static java.util.List<TreeCluster>	cluster(java.lang.String infolder, java.lang.String outfolder, int minimumOverlap) Clusters trees from an input folder
static void	main(java.lang.String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PhyloCluster

public PhyloCluster()

Method Detail

main

public static void main(java.lang.String[] args)

Parameters:

args - The command line arguments

cluster

public static java.util.List<TreeCluster> cluster(java.lang.String infolder,
                                                  java.lang.String outfolder)
                                           throws java.lang.Exception

Clusters trees from an input folder

Parameters:

infolder - Input folder

outfolder - Output folder

Returns:

Clustered trees

Throws:

java.lang.Exception

cluster

public static java.util.List<TreeCluster> cluster(java.lang.String infolder,
                                                  java.lang.String outfolder,
                                                  int minimumOverlap)
                                           throws java.lang.Exception

Clusters trees from an input folder

Parameters:

infolder - Input folder

outfolder - Output folder

minimumOverlap - Minimum number of overlapping taxa

Returns:

Clustered trees

Throws:

java.lang.Exception