Uses of Class
phylosort.TreeCluster

Packages that use TreeCluster

phylosort

PhyloSort core package.

Uses of TreeCluster in phylosort

Methods in phylosort that return types with arguments of type TreeCluster

static java.util.List<TreeCluster>	PhyloCluster.cluster(java.lang.String infolder, java.lang.String outfolder) Clusters trees from an input folder
static java.util.List<TreeCluster>	PhyloCluster.cluster(java.lang.String infolder, java.lang.String outfolder, int minimumOverlap) Clusters trees from an input folder

Methods in phylosort with parameters of type TreeCluster

void	TreeCluster.merge(TreeCluster other) Merges two clusters into one cluster
boolean	TreeCluster.overlaps(TreeCluster other) Checks if two clusters overlap with at least one taxon
boolean	TreeCluster.overlaps(TreeCluster other, int minimumOverlap) Checks if two clusters overlap with a minimum number of overlapping taxa